In trials 1000-1063 of your file, try replacing the display times of 500ms in column X with rt:any. You will also need to add a line to your styles.drt file that has 0-500! in the MinMax field and use that style code in these same trials.
Basically, any trials that you jump to in an input file will not record any stimuli presented in the output file, even if you use a negative number in the block cells for those trials. To work around this, you need to use the rt: feature in those trials to get DirectRT to record what is going on. The use of 0-500! in the MinMax field will cause DirectRT to automatically proceed, just like you programmed in your original trial.
Jason Reed
Empirisoft Software Support Specialist