Thanks for sending me the input files. Try making two changes to the input file and see what happens. First, change the display time for all the WADBackground stimuli to 0 and run the input file. If that doesn't work, change those display times back to 1000 and remove the clear500 command from the time column of the DOT1 stimuli and run the input file. Let me know if either of these changes stops the white flash from happening.
I will also look into using .png format for image files, but could you use .bmp formatted files instead? DirectRT should be able to easily handle any .bmp files.
Jason Reed
Empirisoft Software Support Specialist